IL_5EL4_257

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5EL4|1|1H|G|801, 5EL4|1|1H|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_257 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1082

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5EL4|1|1H|G|674
5EL4|1|1H|A|675
5EL4|1|1H|A|676
5EL4|1|1H|A|677
5EL4|1|1H|C|678
*
5EL4|1|1H|G|799
5EL4|1|1H|A|800
5EL4|1|1H|G|801
5EL4|1|1H|A|802
5EL4|1|1H|U|803
5EL4|1|1H|A|804
5EL4|1|1H|G|805
5EL4|1|1H|C|806

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain 78

50S ribosomal protein L15