3D structure

PDB id
5EL4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGCCUG*CUGGCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL4_319 not in the Motif Atlas
Geometric match to IL_6O5F_001
Geometric discrepancy: 0.3814
The information below is about IL_6O5F_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

5EL4|1|1H|C|2105
5EL4|1|1H|G|2106
5EL4|1|1H|C|2107
5EL4|1|1H|C|2108
5EL4|1|1H|U|2109
5EL4|1|1H|G|2110
*
5EL4|1|1H|C|2179
5EL4|1|1H|U|2180
5EL4|1|1H|G|2181
5EL4|1|1H|G|2182
5EL4|1|1H|C|2183
5EL4|1|1H|G|2184

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 3K
Transfer RNA; tRNA
Chain 71
50S ribosomal protein L1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4204 s