IL_5EL4_334

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

5EL4|1|1H|A|2572, 5EL4|1|1H|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL4_334 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.0718

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5EL4|1|1H|C|2512
5EL4|1|1H|G|2513
*
5EL4|1|1H|C|2571
5EL4|1|1H|A|2572
5EL4|1|1H|C|2573
5EL4|1|1H|G|2574

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 21

50S ribosomal protein L3