IL_5EL4_392

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGGAGCC*GGCGCCGGUGAAAUACC

Length

24 nucleotides

Bulged bases

5EL4|1|1H|A|2126, 5EL4|1|1H|C|2161, 5EL4|1|1H|U|2167, 5EL4|1|1H|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL4|1|1H|G|2123
5EL4|1|1H|G|2124
5EL4|1|1H|G|2125
5EL4|1|1H|A|2126
5EL4|1|1H|G|2127
5EL4|1|1H|C|2128
5EL4|1|1H|C|2129
*
5EL4|1|1H|G|2159
5EL4|1|1H|G|2160
5EL4|1|1H|C|2161
5EL4|1|1H|G|2162
5EL4|1|1H|C|2163
5EL4|1|1H|C|2164
5EL4|1|1H|G|2165
5EL4|1|1H|G|2166
5EL4|1|1H|U|2167
5EL4|1|1H|G|2168
5EL4|1|1H|A|2169
5EL4|1|1H|A|2170
5EL4|1|1H|A|2171
5EL4|1|1H|U|2172
5EL4|1|1H|A|2173
5EL4|1|1H|C|2174
5EL4|1|1H|C|2175

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1