3D structure

PDB id
5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGG*CAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL5_007 not in the Motif Atlas
Geometric match to IL_5VCI_005
Geometric discrepancy: 0.2991
The information below is about IL_5VCI_005
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_64417.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
18

Unit IDs

5EL5|1|13|C|67
5EL5|1|13|G|68
5EL5|1|13|G|69
*
5EL5|1|13|C|99
5EL5|1|13|A|101
5EL5|1|13|G|102

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain BI
30S ribosomal protein S20

Coloring options:


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