IL_5EL5_198

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_198 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1745

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5EL5|1|1G|G|409
5EL5|1|1G|G|410
5EL5|1|1G|A|411
5EL5|1|1G|A|412
5EL5|1|1G|G|413
5EL5|1|1G|A|414
5EL5|1|1G|A|415
5EL5|1|1G|G|416
*
5EL5|1|1G|U|427
5EL5|1|1G|G|428
5EL5|1|1G|U|429
5EL5|1|1G|A|430
5EL5|1|1G|A|431
5EL5|1|1G|A|432
5EL5|1|1G|C|433

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 32

30S ribosomal protein S4