3D structure

PDB id
5EL5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GGUG*CUC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL5_272 not in the Motif Atlas
Homologous match to IL_7RQB_022
Geometric discrepancy: 0.0849
The information below is about IL_7RQB_022
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
Major groove platform
Motif group
IL_05564.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
14

Unit IDs

5EL5|1|1H|G|738
5EL5|1|1H|G|739
5EL5|1|1H|U|740
5EL5|1|1H|G|741
*
5EL5|1|1H|C|756
5EL5|1|1H|U|757
5EL5|1|1H|C|758

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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