IL_5EL5_379

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AGGGAAC*GGUGCCCCGCGAGGGGAGCCCU

Length

29 nucleotides

Bulged bases

5EL5|1|13|U|1025, 5EL5|1|13|C|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL5|1|13|A|1000
5EL5|1|13|G|1001
5EL5|1|13|G|1002
5EL5|1|13|G|1003
5EL5|1|13|A|1004
5EL5|1|13|A|1005
5EL5|1|13|C|1006
*
5EL5|1|13|G|1023
5EL5|1|13|G|1024
5EL5|1|13|U|1025
5EL5|1|13|G|1026
5EL5|1|13|C|1027
5EL5|1|13|C|1028
5EL5|1|13|C|1028|||A
5EL5|1|13|C|1028|||B
5EL5|1|13|G|1029
5EL5|1|13|C|1030
5EL5|1|13|G|1031
5EL5|1|13|A|1032
5EL5|1|13|G|1032|||A
5EL5|1|13|G|1032|||B
5EL5|1|13|G|1033
5EL5|1|13|G|1034
5EL5|1|13|A|1035
5EL5|1|13|G|1036
5EL5|1|13|C|1037
5EL5|1|13|C|1038
5EL5|1|13|C|1039
5EL5|1|13|U|1040

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2E

30S ribosomal protein S3