IL_5EL5_389

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL5_389 not in the Motif Atlas

Geometric match to IL_8VTW_350

Geometric discrepancy: 0.0704

The information below is about IL_8VTW_350

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.2

Basepair signature

cWW-tHW-L-cWW-cWW-tSH-cWW-R-L-L

Number of instances in this motif group

6

Unit IDs

5EL5|1|14|G|1666
5EL5|1|14|G|1667
5EL5|1|14|A|1668
5EL5|1|14|A|1669
5EL5|1|14|C|1670
5EL5|1|14|U|1671
5EL5|1|14|C|1672
5EL5|1|14|U|1673
5EL5|1|14|G|1674
*
5EL5|1|14|C|1990
5EL5|1|14|U|1991
5EL5|1|14|G|1992
5EL5|1|14|U|1993
5EL5|1|14|C|1994

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3