IL_5EL6_017
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL6_017 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.1726
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
5EL6|1|13|G|446
5EL6|1|13|G|447
5EL6|1|13|A|448
5EL6|1|13|C|449
5EL6|1|13|G|450
*
5EL6|1|13|C|483
5EL6|1|13|G|484
5EL6|1|13|G|485
5EL6|1|13|U|486
5EL6|1|13|A|487
5EL6|1|13|C|488
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 7I
- 30S ribosomal protein S16
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