IL_5EL6_086

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

5EL6|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_086 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.367

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

5EL6|1|14|C|844
5EL6|1|14|G|845
5EL6|1|14|C|846
*
5EL6|1|14|G|931
5EL6|1|14|G|932
5EL6|1|14|A|933
5EL6|1|14|G|934

Current chains

Chain 14

23S rRNA

Nearby chains

Chain H5

50S ribosomal protein L30