IL_5EL6_144

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGUGAAC*GGGAGG

Length

15 nucleotides

Bulged bases

5EL6|1|14|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|14|C|2128
5EL6|1|14|C|2129
5EL6|1|14|U|2130
5EL6|1|14|G|2131
5EL6|1|14|U|2132
5EL6|1|14|G|2133
5EL6|1|14|A|2134
5EL6|1|14|A|2135
5EL6|1|14|C|2136
*
5EL6|1|14|G|2155
5EL6|1|14|G|2156
5EL6|1|14|G|2157
5EL6|1|14|A|2158
5EL6|1|14|G|2159
5EL6|1|14|G|2160

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 79

50S ribosomal protein L1