IL_5EL6_192

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_192 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1337

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5EL6|1|1G|G|409
5EL6|1|1G|G|410
5EL6|1|1G|A|411
5EL6|1|1G|A|412
5EL6|1|1G|G|413
5EL6|1|1G|A|414
5EL6|1|1G|A|415
5EL6|1|1G|G|416
*
5EL6|1|1G|U|427
5EL6|1|1G|G|428
5EL6|1|1G|U|429
5EL6|1|1G|A|430
5EL6|1|1G|A|431
5EL6|1|1G|A|432
5EL6|1|1G|C|433

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 32

30S ribosomal protein S4