IL_5EL6_222
3D structure
- PDB id
- 5EL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCG*CUGG
- Length
- 7 nucleotides
- Bulged bases
- 5EL6|1|1G|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL6_222 not in the Motif Atlas
- Geometric match to IL_3R1C_031
- Geometric discrepancy: 0.1532
- The information below is about IL_3R1C_031
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_08424.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 68
Unit IDs
5EL6|1|1G|C|1059
5EL6|1|1G|C|1060
5EL6|1|1G|G|1061
*
5EL6|1|1G|C|1195
5EL6|1|1G|U|1196
5EL6|1|1G|G|1197
5EL6|1|1G|G|1198
Current chains
- Chain 1G
- 16S rRNA
Nearby chains
- Chain 1A
- 30S ribosomal protein S10
- Chain 1L
- Transfer RNA; tRNA
- Chain 22
- 30S ribosomal protein S3
- Chain 42
- 30S ribosomal protein S5
- Chain 4L
- mRNA
- Chain 5A
- 30S ribosomal protein S14 type Z
- Chain 82
- 30S ribosomal protein S9
Coloring options: