IL_5EL6_224

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUA,UAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_224 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.2495

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5EL6|1|1G|U|1121
5EL6|1|1G|U|1122
5EL6|1|1G|A|1123
*
5EL6|1|1G|U|1150
5EL6|1|1G|A|1151
5EL6|1|1G|A|1152

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 82

30S ribosomal protein S9