IL_5EL6_301

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_301 not in the Motif Atlas

Geometric match to IL_9DFE_060

Geometric discrepancy: 0.3512

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

5EL6|1|1H|U|1482
5EL6|1|1H|G|1483
*
5EL6|1|1H|C|1506
5EL6|1|1H|A|1507
5EL6|1|1H|A|1508
5EL6|1|1H|C|1509
5EL6|1|1H|A|1510
5EL6|1|1H|A|1511
5EL6|1|1H|G|1512

Current chains

Chain 1H

23S rRNA

Nearby chains