IL_5EL6_361

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_361 not in the Motif Atlas

Homologous match to IL_5E81_374

Geometric discrepancy: 0.1478

The information below is about IL_5E81_374

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|3K|G|2
5EL6|1|3K|G|3
5EL6|1|3K|U|4
*
5EL6|1|3K|A|69
5EL6|1|3K|C|70
5EL6|1|3K|C|71

Current chains

Chain 3K

tRNALys

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain J8

50S ribosomal protein L28