IL_5EL6_370

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACCC*GUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_370 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2296

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5EL6|1|13|A|185
5EL6|1|13|C|186
5EL6|1|13|C|186|||A
5EL6|1|13|C|186|||B
*
5EL6|1|13|G|191|||E
5EL6|1|13|U|191|||F
5EL6|1|13|G|191
5EL6|1|13|U|192

Current chains

Chain 13

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S20