IL_5EL6_379

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAAGACCA*UGGGGGAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1G|U|605
5EL6|1|1G|G|606
5EL6|1|1G|A|607
5EL6|1|1G|A|608
5EL6|1|1G|A|609
5EL6|1|1G|G|610
5EL6|1|1G|A|611
5EL6|1|1G|C|612
5EL6|1|1G|C|613
5EL6|1|1G|A|614
*
5EL6|1|1G|U|626
5EL6|1|1G|G|627
5EL6|1|1G|G|628
5EL6|1|1G|G|629
5EL6|1|1G|G|630
5EL6|1|1G|G|631
5EL6|1|1G|A|632
5EL6|1|1G|G|633

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 32

30S ribosomal protein S4

Chain 72

30S ribosomal protein S8

Chain 7A

30S ribosomal protein S16