IL_5EL6_393

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

5EL6|1|1H|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL6_393 not in the Motif Atlas

Homologous match to IL_9DFE_067

Geometric discrepancy: 0.0659

The information below is about IL_9DFE_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5EL6|1|1H|A|1669
5EL6|1|1H|C|1670
5EL6|1|1H|U|1671
5EL6|1|1H|C|1672
5EL6|1|1H|U|1673
5EL6|1|1H|G|1674
*
5EL6|1|1H|C|1990
5EL6|1|1H|U|1991
5EL6|1|1H|G|1992
5EL6|1|1H|U|1993

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14