IL_5EL6_397

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACGGCGUCAAGCCGGUAAG*CGAGG

Length

25 nucleotides

Bulged bases

5EL6|1|1H|U|2797, 5EL6|1|1H|C|2798, 5EL6|1|1H|A|2799, 5EL6|1|1H|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL6|1|1H|C|2789
5EL6|1|1H|A|2790
5EL6|1|1H|C|2791
5EL6|1|1H|G|2792
5EL6|1|1H|G|2793
5EL6|1|1H|C|2794
5EL6|1|1H|G|2795
5EL6|1|1H|U|2797
5EL6|1|1H|C|2798
5EL6|1|1H|A|2799
5EL6|1|1H|A|2801
5EL6|1|1H|G|2802
5EL6|1|1H|C|2803
5EL6|1|1H|C|2804
5EL6|1|1H|G|2805
5EL6|1|1H|G|2807
5EL6|1|1H|U|2808
5EL6|1|1H|A|2809
5EL6|1|1H|A|2810
5EL6|1|1H|G|2811
*
5EL6|1|1H|C|2889
5EL6|1|1H|G|2891
5EL6|1|1H|A|2892
5EL6|1|1H|G|2893
5EL6|1|1H|G|2894

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 21

50S ribosomal protein L3