IL_5EL7_009
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CGG,CCG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL7_009 not in the Motif Atlas
- Geometric match to IL_6OL3_002
- Geometric discrepancy: 0.1206
- The information below is about IL_6OL3_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
5EL7|1|13|C|137
5EL7|1|13|G|138
5EL7|1|13|G|139
*
5EL7|1|13|C|224
5EL7|1|13|C|225
5EL7|1|13|G|226
Current chains
- Chain 13
- 16S rRNA
Nearby chains
- Chain 7I
- 30S ribosomal protein S16
- Chain BI
- 30S ribosomal protein S20
Coloring options: