IL_5EL7_019

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1119

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5EL7|1|13|G|409
5EL7|1|13|G|410
5EL7|1|13|A|411
5EL7|1|13|A|412
5EL7|1|13|G|413
5EL7|1|13|A|414
5EL7|1|13|A|415
5EL7|1|13|G|416
*
5EL7|1|13|U|427
5EL7|1|13|G|428
5EL7|1|13|U|429
5EL7|1|13|A|430
5EL7|1|13|A|431
5EL7|1|13|A|432
5EL7|1|13|C|433

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 3E

30S ribosomal protein S4