IL_5EL7_071

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_071 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0624

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5EL7|1|14|U|239
5EL7|1|14|G|240
5EL7|1|14|A|241
5EL7|1|14|G|242
5EL7|1|14|U|243
5EL7|1|14|A|244
5EL7|1|14|G|245
*
5EL7|1|14|C|253
5EL7|1|14|G|254
5EL7|1|14|A|255
5EL7|1|14|A|256
5EL7|1|14|A|257
5EL7|1|14|G|258

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain M5

50S ribosomal protein L35