IL_5EL7_103

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5EL7|1|14|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_103 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.143

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5EL7|1|14|G|1031
5EL7|1|14|A|1032
5EL7|1|14|U|1033
5EL7|1|14|G|1034
*
5EL7|1|14|C|1121
5EL7|1|14|G|1122
5EL7|1|14|C|1123

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 45

50S ribosomal protein L16

Chain 59

50S ribosomal protein L6