IL_5EL7_104

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGCGGACAGC*GUCGAGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|14|C|1041
5EL7|1|14|G|1042
5EL7|1|14|C|1043
5EL7|1|14|G|1044
5EL7|1|14|G|1047
5EL7|1|14|A|1048
5EL7|1|14|C|1049
5EL7|1|14|A|1050
5EL7|1|14|G|1051
5EL7|1|14|C|1052
*
5EL7|1|14|G|1107
5EL7|1|14|U|1108
5EL7|1|14|C|1109
5EL7|1|14|G|1110
5EL7|1|14|A|1111
5EL7|1|14|G|1112
5EL7|1|14|U|1113
5EL7|1|14|G|1114

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 59

50S ribosomal protein L6

Chain D5

50S ribosomal protein L25