IL_5EL7_129

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5EL7|1|14|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_129 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1186

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5EL7|1|14|C|1686
5EL7|1|14|G|1687
5EL7|1|14|U|1688
5EL7|1|14|A|1689
5EL7|1|14|A|1690
5EL7|1|14|C|1691
*
5EL7|1|14|G|1696
5EL7|1|14|G|1697
5EL7|1|14|A|1698
5EL7|1|14|G|1699
5EL7|1|14|A|1700
5EL7|1|14|A|1701
5EL7|1|14|G|1702

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA