IL_5EL7_146

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCUAGGAUAG*CC

Length

12 nucleotides

Bulged bases

5EL7|1|14|C|2111

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_146 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.2909

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5EL7|1|14|G|2110
5EL7|1|14|C|2111
5EL7|1|14|U|2113
5EL7|1|14|A|2114
5EL7|1|14|G|2115
5EL7|1|14|G|2116
5EL7|1|14|A|2117
5EL7|1|14|U|2118
5EL7|1|14|A|2119
5EL7|1|14|G|2120
*
5EL7|1|14|C|2178
5EL7|1|14|C|2179

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 79

50S ribosomal protein L1