IL_5EL7_157

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_157 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1764

The information below is about IL_4WF9_093

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5EL7|1|14|C|2466
5EL7|1|14|C|2467
5EL7|1|14|G|2468
5EL7|1|14|A|2469
5EL7|1|14|G|2470
*
5EL7|1|14|C|2480
5EL7|1|14|G|2481
5EL7|1|14|G|2482
5EL7|1|14|C|2483
5EL7|1|14|G|2484

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16