IL_5EL7_158

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_158 not in the Motif Atlas

Homologous match to IL_7A0S_088

Geometric discrepancy: 0.0998

The information below is about IL_7A0S_088

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5EL7|1|14|C|2507
5EL7|1|14|G|2508
*
5EL7|1|14|U|2580
5EL7|1|14|G|2581
5EL7|1|14|G|2582

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 29

50S ribosomal protein L3

Chain J5

50S ribosomal protein L32