IL_5EL7_180

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

5EL7|1|1G|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_180 not in the Motif Atlas

Homologous match to IL_6CZR_113

Geometric discrepancy: 0.1645

The information below is about IL_6CZR_113

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

52

Unit IDs

5EL7|1|1G|U|30
5EL7|1|1G|G|31
5EL7|1|1G|A|32
*
5EL7|1|1G|U|552
5EL7|1|1G|A|553

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 3A

30S ribosomal protein S12