3D structure

PDB id
5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
UUA*UAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: UUA,UAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5EL7_226 not in the Motif Atlas
Geometric match to IL_1U9S_007
Geometric discrepancy: 0.2339
The information below is about IL_1U9S_007
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

5EL7|1|1G|U|1121
5EL7|1|1G|U|1122
5EL7|1|1G|A|1123
*
5EL7|1|1G|U|1150
5EL7|1|1G|A|1151
5EL7|1|1G|A|1152

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain 1A
30S ribosomal protein S10
Chain 82
30S ribosomal protein S9

Coloring options:


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