IL_5EL7_227

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1G|G|1124
5EL7|1|1G|U|1125
5EL7|1|1G|U|1126
5EL7|1|1G|G|1127
5EL7|1|1G|C|1128
5EL7|1|1G|C|1129
5EL7|1|1G|A|1130
5EL7|1|1G|G|1131
5EL7|1|1G|C|1132
*
5EL7|1|1G|G|1142
5EL7|1|1G|G|1143
5EL7|1|1G|G|1144
5EL7|1|1G|C|1145
5EL7|1|1G|A|1146
5EL7|1|1G|C|1147
5EL7|1|1G|U|1148
5EL7|1|1G|C|1149

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 82

30S ribosomal protein S9