IL_5EL7_286

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

5EL7|1|1H|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_286 not in the Motif Atlas

Homologous match to IL_7RQB_048

Geometric discrepancy: 0.1434

The information below is about IL_7RQB_048

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5EL7|1|1H|G|1219
5EL7|1|1H|A|1220
5EL7|1|1H|C|1221
*
5EL7|1|1H|G|1229|||A
5EL7|1|1H|C|1230

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain D8

50S ribosomal protein L21