IL_5EL7_309
3D structure
- PDB id
- 5EL7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 5EL7|1|1H|G|1699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5EL7_309 not in the Motif Atlas
- Geometric match to IL_7RQB_068
- Geometric discrepancy: 0.1138
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5EL7|1|1H|C|1686
5EL7|1|1H|G|1687
5EL7|1|1H|U|1688
5EL7|1|1H|A|1689
5EL7|1|1H|A|1690
5EL7|1|1H|C|1691
*
5EL7|1|1H|G|1696
5EL7|1|1H|G|1697
5EL7|1|1H|A|1698
5EL7|1|1H|G|1699
5EL7|1|1H|A|1700
5EL7|1|1H|A|1701
5EL7|1|1H|G|1702
Current chains
- Chain 1H
- 23S rRNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
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