IL_5EL7_358

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CGG*CCAG

Length

7 nucleotides

Bulged bases

5EL7|1|1J|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_358 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3965

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5EL7|1|1J|C|17
5EL7|1|1J|G|18
5EL7|1|1J|G|19
*
5EL7|1|1J|C|64
5EL7|1|1J|C|65
5EL7|1|1J|A|66
5EL7|1|1J|G|67

Current chains

Chain 1J

5S rRNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 65

50S ribosomal protein L18

Chain D5

50S ribosomal protein L25