IL_5EL7_372

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

5EL7|1|13|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_372 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.3768

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|13|G|1047
5EL7|1|13|G|1048
5EL7|1|13|U|1049
5EL7|1|13|G|1050
*
5EL7|1|13|C|1208
5EL7|1|13|C|1209
5EL7|1|13|C|1210

Current chains

Chain 13

16S rRNA

Nearby chains

Chain 5I

30S ribosomal protein S14 type Z