IL_5EL7_392

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5EL7_392 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.1674

The information below is about IL_9DFE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5EL7|1|1H|A|1469
5EL7|1|1H|G|1470
5EL7|1|1H|A|1471
5EL7|1|1H|A|1472
5EL7|1|1H|G|1473
*
5EL7|1|1H|U|1520
5EL7|1|1H|G|1521
5EL7|1|1H|G|1522
5EL7|1|1H|U|1523

Current chains

Chain 1H

23S rRNA

Nearby chains