IL_5EL7_404

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGGGAGCC*GCGCCGGUGAAAUACCAC

Length

27 nucleotides

Bulged bases

5EL7|1|1H|A|2126, 5EL7|1|1H|G|2165, 5EL7|1|1H|G|2166, 5EL7|1|1H|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5EL7|1|1H|G|2121
5EL7|1|1H|U|2122
5EL7|1|1H|G|2123
5EL7|1|1H|G|2124
5EL7|1|1H|G|2125
5EL7|1|1H|A|2126
5EL7|1|1H|G|2127
5EL7|1|1H|C|2128
5EL7|1|1H|C|2129
*
5EL7|1|1H|G|2160
5EL7|1|1H|C|2161
5EL7|1|1H|G|2162
5EL7|1|1H|C|2163
5EL7|1|1H|C|2164
5EL7|1|1H|G|2165
5EL7|1|1H|G|2166
5EL7|1|1H|U|2167
5EL7|1|1H|G|2168
5EL7|1|1H|A|2169
5EL7|1|1H|A|2170
5EL7|1|1H|A|2171
5EL7|1|1H|U|2172
5EL7|1|1H|A|2173
5EL7|1|1H|C|2174
5EL7|1|1H|C|2175
5EL7|1|1H|A|2176
5EL7|1|1H|C|2177

Current chains

Chain 1H

23S rRNA

Nearby chains

Chain 3K

Transfer RNA; tRNA

Chain 71

50S ribosomal protein L1