IL_5F5F_003

3D structure

PDB id

5F5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray structure of Roquin ROQ domain in complex with a Selex-derived hexa-loop RNA motif

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

5F5F|1|F|U|5
5F5F|1|F|G|6
5F5F|1|F|C|7
*
5F5F|1|F|G|14
5F5F|1|F|G|15
5F5F|1|F|A|16

Current chains

Chain F

RNA (5'-R(P*UP*GP*AP*CP*UP*GP*CP*GP*UP*UP*UP*UP*AP*GP*GP*AP*GP*UP*UP*A)-3')

Nearby chains

Chain C

Roquin-1

Chain E

Roquin-1

Chain G

Roquin-1