IL_5F8K_022
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 5F8K|1|1A|G|823, 5F8K|1|1A|A|835, 5F8K|1|1A|A|836, 5F8K|1|1A|C|837
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5F8K_022 not in the Motif Atlas
- Homologous match to IL_7RQB_023
- Geometric discrepancy: 0.0702
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5F8K|1|1A|G|822
5F8K|1|1A|G|823
5F8K|1|1A|A|824
*
5F8K|1|1A|U|834
5F8K|1|1A|A|835
5F8K|1|1A|A|836
5F8K|1|1A|C|837
5F8K|1|1A|C|838
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1D
- 50S ribosomal protein L2
- Chain 1F
- 50S ribosomal protein L4
- Chain 1W
- 50S ribosomal protein L22
- Chain 1y
- Cathelicidin-3
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