IL_5F8K_042
3D structure
- PDB id
- 5F8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUGG*CCAUC
- Length
- 10 nucleotides
- Bulged bases
- 5F8K|1|1A|U|1107, 5F8K|1|1A|C|1122
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5F8K_042 not in the Motif Atlas
- Homologous match to IL_7RQB_043
- Geometric discrepancy: 0.3378
- The information below is about IL_7RQB_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5F8K|1|1A|G|1105
5F8K|1|1A|U|1106
5F8K|1|1A|U|1107
5F8K|1|1A|G|1108
5F8K|1|1A|G|1109
*
5F8K|1|1A|C|1121
5F8K|1|1A|C|1122
5F8K|1|1A|A|1123
5F8K|1|1A|U|1124
5F8K|1|1A|C|1125
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
Coloring options: