IL_5F8K_086

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|1A|G|2146
5F8K|1|1A|G|2147
5F8K|1|1A|A|2148
5F8K|1|1A|G|2149
5F8K|1|1A|C|2150
*
5F8K|1|1A|G|2182
5F8K|1|1A|C|2183
5F8K|1|1A|G|2184
5F8K|1|1A|C|2185
5F8K|1|1A|C|2186
5F8K|1|1A|G|2187
5F8K|1|1A|G|2188
5F8K|1|1A|U|2189
5F8K|1|1A|G|2190
5F8K|1|1A|A|2191
5F8K|1|1A|A|2192
5F8K|1|1A|A|2193
5F8K|1|1A|U|2194
5F8K|1|1A|A|2195
5F8K|1|1A|C|2196

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains