IL_5F8K_106

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_106 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.0822

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5F8K|1|1A|C|2707
5F8K|1|1A|U|2708
*
5F8K|1|1A|A|2723
5F8K|1|1A|U|2724
5F8K|1|1A|A|2725
5F8K|1|1A|A|2726
5F8K|1|1A|G|2727

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19