IL_5F8K_141

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAAGACC*GGGGGAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|1a|U|605
5F8K|1|1a|G|606
5F8K|1|1a|A|607
5F8K|1|1a|A|608
5F8K|1|1a|A|609
5F8K|1|1a|G|610
5F8K|1|1a|A|611
5F8K|1|1a|C|612
5F8K|1|1a|C|613
*
5F8K|1|1a|G|627
5F8K|1|1a|G|628
5F8K|1|1a|G|629
5F8K|1|1a|G|630
5F8K|1|1a|G|631
5F8K|1|1a|A|632
5F8K|1|1a|G|633

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1h

30S ribosomal protein S8

Chain 1p

30S ribosomal protein S16