IL_5F8K_188

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_188 not in the Motif Atlas

Homologous match to IL_7RQB_013

Geometric discrepancy: 0.1051

The information below is about IL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

5F8K|1|2A|U|293
5F8K|1|2A|A|294
5F8K|1|2A|G|295
*
5F8K|1|2A|C|343
5F8K|1|2A|G|344
5F8K|1|2A|A|345
5F8K|1|2A|A|346
5F8K|1|2A|A|347

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2Y

50S ribosomal protein L24