IL_5F8K_259

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUCGC*GCGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_259 not in the Motif Atlas

Geometric match to IL_1U6B_002

Geometric discrepancy: 0.3783

The information below is about IL_1U6B_002

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5F8K|1|2A|G|2101
5F8K|1|2A|U|2102
5F8K|1|2A|C|2103
5F8K|1|2A|G|2104
5F8K|1|2A|C|2105
*
5F8K|1|2A|G|2184
5F8K|1|2A|C|2185
5F8K|1|2A|G|2186
5F8K|1|2A|G|2187
5F8K|1|2A|C|2188

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9