IL_5F8K_261

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5F8K|1|2A|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_261 not in the Motif Atlas

Homologous match to IL_7RQB_085

Geometric discrepancy: 0.3951

The information below is about IL_7RQB_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|G|2110
5F8K|1|2A|C|2111
5F8K|1|2A|G|2112
5F8K|1|2A|U|2113
5F8K|1|2A|A|2114
5F8K|1|2A|G|2115
5F8K|1|2A|G|2116
5F8K|1|2A|A|2117
5F8K|1|2A|U|2118
5F8K|1|2A|A|2119
5F8K|1|2A|G|2120
*
5F8K|1|2A|C|2178
5F8K|1|2A|C|2179

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains