IL_5F8K_263

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGUGAACC*GGGGGAG

Length

16 nucleotides

Bulged bases

5F8K|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2A|C|2129
5F8K|1|2A|U|2130
5F8K|1|2A|G|2131
5F8K|1|2A|U|2132
5F8K|1|2A|G|2133
5F8K|1|2A|A|2134
5F8K|1|2A|A|2135
5F8K|1|2A|C|2136
5F8K|1|2A|C|2137
*
5F8K|1|2A|G|2153
5F8K|1|2A|G|2154
5F8K|1|2A|G|2155
5F8K|1|2A|G|2156
5F8K|1|2A|G|2157
5F8K|1|2A|A|2158
5F8K|1|2A|G|2159

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains