IL_5F8K_336

3D structure

PDB id

5F8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

5F8K|1|2a|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5F8K_336 not in the Motif Atlas

Homologous match to IL_5J7L_047

Geometric discrepancy: 0.2495

The information below is about IL_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5F8K|1|2a|G|1050
5F8K|1|2a|C|1051
5F8K|1|2a|U|1052
5F8K|1|2a|G|1053
5F8K|1|2a|C|1054
5F8K|1|2a|A|1055
5F8K|1|2a|U|1056
*
5F8K|1|2a|A|1204
5F8K|1|2a|U|1205
5F8K|1|2a|G|1206
5F8K|1|2a|2MG|1207
5F8K|1|2a|C|1208

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z